GA4GHclient

This is the released version of GA4GHclient; for the devel version, see GA4GHclient.

A Bioconductor package for accessing GA4GH API data servers

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DOI: 10.18129/B9.bioc.GA4GHclient

Bioconductor version: Release (3.22)

GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.

Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb]

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("GA4GHclient")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GA4GHclient")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GA4GHclient")

GA4GHclient HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataRepresentation, Software, ThirdPartyClient

Version 1.34.0

In Bioconductor since BioC 3.5 (R-3.4) (8.5 years)

License GPL (>= 2)

Depends R (>= 3.5.0), S4Vectors

Imports BiocGenerics, Biostrings, dplyr, Seqinfo, GenomicRanges, httr, IRanges, jsonlite, methods, VariantAnnotation

System Requirements

URL https://github.com/labbcb/GA4GHclient

Bug Reports https://github.com/labbcb/GA4GHclient/issues

Suggests GenomeInfoDb, AnnotationDbi, BiocStyle, DT, knitr, org.Hs.eg.db, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene

Linking To

Enhances

Depends On Me GA4GHshiny

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GA4GHclient_1.34.0.tar.gz

Windows Binary (x86_64) GA4GHclient_1.33.1.zip

macOS Binary (x86_64) GA4GHclient_1.34.0.tgz

macOS Binary (arm64) GA4GHclient_1.34.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/GA4GHclient

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GA4GHclient

Bioc Package Browser https://code.bioconductor.org/browse/GA4GHclient/

Package Short Url https://bioconductor.org/packages/GA4GHclient/

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