CexoR
This is the released version of CexoR; for the devel version, see CexoR.
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Bioconductor version: Release (3.22)
Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Then, irreproducible discovery rate for overlapping peak-pairs across biological replicates is computed.
Author: Pedro Madrigal [aut, cre] ORCID iD ORCID: 0000-0003-1959-8199
Maintainer: Pedro Madrigal <pmadrigal at ebi.ac.uk>
citation("CexoR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CexoR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CexoR")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.