spatialDmelxsim

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see spatialDmelxsim.

Spatial allelic expression counts for fly cross embryo

Bioconductor version: 3.21

Spatial allelic expression counts from Combs & Fraser (2018), compiled into a SummarizedExperiment object. This package contains data of allelic expression counts of spatial slices of a fly embryo, a Drosophila melanogaster x Drosophila simulans cross. See the CITATION file for the data source, and the associated script for how the object was constructed from publicly available data.

Author: Michael Love [aut, cre]

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("spatialDmelxsim")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("spatialDmelxsim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spatialDmelxsim")

spatialDmelxsim HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, GEO, RNASeqData, SequencingData

Version 1.14.0

License GPL-3

Depends R (>= 4.1), ExperimentHub, SummarizedExperiment

Imports utils

System Requirements

URL https://github.com/mikelove/spatialDmelxsim

Bug Reports https://github.com/mikelove/spatialDmelxsim/issues

Suggests knitr, rmarkdown, BiocStyle

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package spatialDmelxsim_1.14.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/spatialDmelxsim

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/spatialDmelxsim

Package Short Url https://bioconductor.org/packages/spatialDmelxsim/

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