minionSummaryData

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see minionSummaryData.

Summarised MinION sequencing data published by Ashton et al. 2015

Bioconductor version: 3.21

Summarised MinION sequencing data for Salmonella Typhi published by Ashton et al. in 2015. Three replicate runs are each provided as Fast5Summary objects.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("minionSummaryData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("minionSummaryData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("minionSummaryData")

Creating example MinION summary dataset HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, SequencingData

Version 1.38.0

License MIT + file LICENSE

Depends R (>= 3.2.0)

Imports

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Suggests BiocStyle, knitr, rmarkdown

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Follow Installation instructions to use this package in your R session.

Source Package minionSummaryData_1.38.0.tar.gz

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Source Repository git clone https://git.bioconductor.org/packages/minionSummaryData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/minionSummaryData

Package Short Url https://bioconductor.org/packages/minionSummaryData/

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