SpatialDatasets

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see SpatialDatasets.

Collection of spatial omics datasets

Bioconductor version: 3.21

This is a collection of publically available spatial omics datasets. Where possible we have curated these datasets as either SpatialExperiments, MoleculeExperiments or CytoImageLists and included annotations of the sample characteristics.

Author: Farhan Ameen [aut], Nick Robertson [aut], Alex Qin [aut], Shreya Rao [aut], Elijah Willie [aut], Ellis Patrick [aut, cre]

Maintainer: Ellis Patrick <ellis.patrick at sydney.edu.au>

Citation (from within R, enter citation("SpatialDatasets")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("SpatialDatasets")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SpatialDatasets")

The SpatialDataset package HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData

Version 1.6.3

License GPL-3

Depends ExperimentHub, SpatialExperiment

Imports utils

System Requirements

URL https://github.com/SydneyBioX/SpatialDatasets

Bug Reports https://github.com/SydneyBioX/SpatialDatasets/issues

Suggests BiocStyle, knitr, rmarkdown, cytomapper

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me lisaClust, spicyR, spicyWorkflow

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SpatialDatasets_1.6.3.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/SpatialDatasets

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SpatialDatasets

Package Short Url https://bioconductor.org/packages/SpatialDatasets/

Package Downloads Report Download Stats