MouseThymusAgeing

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see MouseThymusAgeing.

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Bioconductor version: 3.21

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

Author: Mike Morgan [aut, cre], Jeanette Baran-Gale [aut]

Maintainer: Mike Morgan <michael.morgan at abdn.ac.uk>

Citation (from within R, enter citation("MouseThymusAgeing")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MouseThymusAgeing")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseThymusAgeing")

Available datasets HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, SingleCellData

Version 1.16.0

License GPL-3

Depends SingleCellExperiment, SummarizedExperiment

Imports ExperimentHub, methods, BiocGenerics, S4Vectors

System Requirements

URL

Bug Reports https://github.com/MarioniLab/MouseThymusAgeing/issues

Suggests knitr, scuttle, rmarkdown, BiocStyle

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me miloR

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MouseThymusAgeing_1.16.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/MouseThymusAgeing

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseThymusAgeing

Package Short Url https://bioconductor.org/packages/MouseThymusAgeing/

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