HCAData

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see HCAData.

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Bioconductor version: 3.21

This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).

Author: Federico Marini [aut, cre] ORCID iD ORCID: 0000-0003-3252-7758

Maintainer: Federico Marini <marinif at uni-mainz.de>

Citation (from within R, enter citation("HCAData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("HCAData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HCAData")

Accessing the Human Cell Atlas datasets HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SingleCellData

Version 1.24.0

License MIT + file LICENSE

Depends R (>= 3.6), SingleCellExperiment

Imports ExperimentHub, AnnotationHub, HDF5Array, utils

System Requirements

URL https://github.com/federicomarini/HCAData

Suggests knitr, rmarkdown, BiocStyle, scran(>= 1.11.4), BiocSingular, scater, scuttle, Rtsne, igraph, iSEE, testthat

Linking To

Enhances

Depends On Me OSCA.workflows

Imports Me

Suggests Me

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HCAData_1.24.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/HCAData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HCAData

Package Short Url https://bioconductor.org/packages/HCAData/

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