AssessORFData

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see AssessORFData.

Data and Files for the AssessORF Package

Bioconductor version: 3.21

This package provides access to mapping and results objects generated by the AssessORF package, as well as the genome sequences for the strains corresponding to those objects.

Author: Deepank Korandla [aut], Nicholas Cooley [cre] ORCID iD ORCID: 0000-0002-6029-304X

Maintainer: Nicholas Cooley <npc19 at pitt.edu>

Citation (from within R, enter citation("AssessORFData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("AssessORFData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AssessORFData")

Using AssessORFData PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Bacillus_subtilis_Data, Escherichia_coli_Data, ExperimentData, Genome, OrganismData, Proteome, Pseudomonas_aeruginosa_Data, SequencingData, Staphylococcus_aureus_Data

Version 1.26.0

License GPL-3

Depends R (>= 3.5.0), RSQLite (>= 1.1)

Imports DECIPHER, utils

System Requirements

URL

Suggests AssessORF, BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me AssessORF

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AssessORFData_1.26.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/AssessORFData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AssessORFData

Package Short Url https://bioconductor.org/packages/AssessORFData/

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