reactome.db

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see reactome.db.

A set of annotation maps for reactome

Bioconductor version: 3.21

A set of annotation maps for reactome assembled using data from reactome. This package has been created by a third-party developer, and is not affiliated with the Reactome team.

Author: Willem Ligtenberg

Maintainer: Willem Ligtenberg <willem at 42analytics.eu>

Citation (from within R, enter citation("reactome.db")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("reactome.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, FunctionalAnnotation

Version 1.92.0

License CC BY 4.0

Depends R (>= 2.7.0), methods, AnnotationDbi(>= 1.33.0)

Imports methods, AnnotationDbi

System Requirements

URL

Bug Reports https://gitlab.com/42analytics1/public/reactome.db-r-package/-/issues

Suggests RSQLite

Linking To

Enhances

Depends On Me

Imports Me attract, bioCancer, famat, methylGSA, ReactomePA, scTensor, signatureSearch, SMITE, PathwayVote

Suggests Me AnnotationDbi, BioCor, ChIPpeakAnno, FGNet, fgsea, gatom, MLP, PCAN, PhosR, rGREAT, safe, sparrow, BaseSet, rliger

Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package reactome.db_1.92.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Package Short Url https://bioconductor.org/packages/reactome.db/

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