BSgenome.Mmusculus.UCSC.mm10

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Mmusculus.UCSC.mm10.

Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BSgenome.Mmusculus.UCSC.mm10")

For older versions of R, please refer to the appropriate Bioconductor release.

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Depends On Me BSgenome.Mmusculus.UCSC.mm10.masked

Imports Me epiregulon, musicatk, BSgenome.Mmusculus.UCSC.mm10.masked

Suggests Me AneuFinder, BSgenome, circRNAprofiler, cliProfiler, crisprDesign, CRISPRseek, enhancerHomologSearch, EpiCompare, factR, gcapc, GenomicRanges, GRaNIE, HiCDCPlus, InPAS, m6Aboost, MiRaGE, monaLisa, Motif2Site, multicrispr, NADfinder, periodicDNA, plyinteractions, scanMiRApp, scmeth, SCOPE, SingleMoleculeFootprinting, ICAMS

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Follow Installation instructions to use this package in your R session.