AHLRBaseDbs

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see AHLRBaseDbs.

LRBaseDbs for AnnotationHub

Bioconductor version: 3.21

Supplies AnnotationHub with `LRbaseDb` Ligand-Receptor annotation databases for many species. All the SQLite files are generated by our Snakemake workflow [lrbase-workflow](https://github.com/rikenbit/lrbase-workflow). For the details, see the README.md of lrbase-workflow.

Author: Koki Tsuyuzaki [aut, cre], Manabu Ishii [aut], Itoshi Nikaido [aut]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("AHLRBaseDbs")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("AHLRBaseDbs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AHLRBaseDbs")

Provide LRBaseDb databases for AnnotationHub HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, AnnotationHub, FunctionalAnnotation, LRBaseDb

Version 1.8.0

License Artistic-2.0

Depends R (>= 4.1.0)

Imports AnnotationHub(>= 2.22.0)

System Requirements

URL

Bug Reports https://github.com/rikenbit/AHLRBaseDbs/issues

Suggests BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AHLRBaseDbs_1.8.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Package Short Url https://bioconductor.org/packages/AHLRBaseDbs/

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