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velociraptor
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see velociraptor.
Toolkit for Single-Cell Velocity
Bioconductor version: 3.21
This package provides Bioconductor-friendly wrappers for RNA velocity calculations in single-cell RNA-seq data. We use the basilisk package to manage Conda environments, and the zellkonverter package to convert data structures between SingleCellExperiment (R) and AnnData (Python). The information produced by the velocity methods is stored in the various components of the SingleCellExperiment class.
Author: Kevin Rue-Albrecht [aut, cre] ORCID iD ORCID: 0000-0003-3899-3872 , Aaron Lun [aut] ORCID iD ORCID: 0000-0002-3564-4813 , Charlotte Soneson [aut] ORCID iD ORCID: 0000-0003-3833-2169 , Michael Stadler [aut] ORCID iD ORCID: 0000-0002-2269-4934
Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>
citation("velociraptor")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("velociraptor")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("velociraptor")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.