traseR

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see traseR.

GWAS trait-associated SNP enrichment analyses in genomic intervals

Bioconductor version: 3.21

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

Author: Li Chen, Zhaohui S.Qin

Maintainer: li chen<li.chen at emory.edu>

Citation (from within R, enter citation("traseR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("traseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("traseR")

Perform GWAS trait-associated SNP enrichment analyses in genomic intervals PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software

Version 1.38.0

In Bioconductor since BioC 3.2 (R-3.2) (10 years)

License GPL

Depends R (>= 3.5.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19

Imports

System Requirements

URL

Suggests BiocStyle, RUnit, BiocGenerics

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package traseR_1.38.0.tar.gz

Windows Binary (x86_64) traseR_1.38.0.zip (64-bit only)

macOS Binary (x86_64) traseR_1.38.0.tgz

macOS Binary (arm64) traseR_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/traseR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/traseR

Bioc Package Browser https://code.bioconductor.org/browse/traseR/

Package Short Url https://bioconductor.org/packages/traseR/

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