sights

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see sights.

Statistics and dIagnostic Graphs for HTS

Bioconductor version: 3.21

SIGHTS is a suite of normalization methods, statistical tests, and diagnostic graphical tools for high throughput screening (HTS) assays. HTS assays use microtitre plates to screen large libraries of compounds for their biological, chemical, or biochemical activity.

Author: Elika Garg [aut, cre], Carl Murie [aut], Heydar Ensha [ctb], Robert Nadon [aut]

Maintainer: Elika Garg <elika.garg at mail.mcgill.ca>

Citation (from within R, enter citation("sights")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("sights")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sights")

Using **SIGHTS** R-package HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BatchEffect, CellBasedAssays, ImmunoOncology, MicrotitrePlateAssay, MultipleComparison, Normalization, Preprocessing, QualityControl, Software, Visualization

Version 1.34.0

In Bioconductor since BioC 3.4 (R-3.3) (9 years)

License GPL-3 | file LICENSE

Depends R (>= 3.3)

Imports MASS (>= 7.3), qvalue(>= 2.2), ggplot2 (>= 2.0), reshape2 (>= 1.4), lattice (>= 0.2), stats (>= 3.3)

System Requirements

URL https://eg-r.github.io/sights/

Bug Reports https://github.com/eg-r/sights/issues

Suggests testthat, knitr, rmarkdown, ggthemes, gridExtra, xlsx

Linking To

Enhances

Depends On Me

Imports Me

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Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sights_1.34.0.tar.gz

Windows Binary (x86_64) sights_1.34.0.zip

macOS Binary (x86_64) sights_1.34.0.tgz

macOS Binary (arm64) sights_1.34.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/sights

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sights

Bioc Package Browser https://code.bioconductor.org/browse/sights/

Package Short Url https://bioconductor.org/packages/sights/

Package Downloads Report Download Stats