sevenbridges

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see sevenbridges.

Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

Bioconductor version: 3.21

R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.

Author: Phil Webster [aut, cre], Soner Koc [aut] ORCID iD ORCID: 0000-0002-0772-6600 , Nan Xiao [aut], Tengfei Yin [aut], Dusan Randjelovic [ctb], Emile Young [ctb], Velsera [cph, fnd]

Maintainer: Phil Webster <phil.webster at velsera.com>

Citation (from within R, enter citation("sevenbridges")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("sevenbridges")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sevenbridges")

Complete Guide for Seven Bridges API R Client HTML R Script

Creating Your Docker Container and Command Line Interface (with docopt) HTML R Script

Describe and Execute CWL Tools/Workflows in R HTML R Script

Find Data on CGC via Data Browser and Datasets API HTML R Script

IDE Container: RStudio Server, Shiny Server, and More HTML R Script

Master Tutorial: Use R for Cancer Genomics Cloud HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Software, ThirdPartyClient

Version 1.38.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License Apache License 2.0 | file LICENSE

Depends methods, utils, stats

Imports httr, jsonlite, yaml, objectProperties, stringr, S4Vectors, docopt, curl, uuid, data.table

System Requirements

URL https://www.sevenbridges.com https://sbg.github.io/sevenbridges-r/ https://github.com/sbg/sevenbridges-r

Bug Reports https://github.com/sbg/sevenbridges-r/issues

Suggests knitr, rmarkdown, testthat, readr

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sevenbridges_1.38.0.tar.gz

Windows Binary (x86_64) sevenbridges_1.38.0.zip

macOS Binary (x86_64) sevenbridges_1.38.0.tgz

macOS Binary (arm64) sevenbridges_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/sevenbridges

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sevenbridges

Bioc Package Browser https://code.bioconductor.org/browse/sevenbridges/

Package Short Url https://bioconductor.org/packages/sevenbridges/

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