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sagenhaft
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see sagenhaft.
Collection of functions for reading and comparing SAGE libraries
Bioconductor version: 3.21
This package implements several functions useful for analysis of gene expression data by sequencing tags as done in SAGE (Serial Analysis of Gene Expressen) data, i.e. extraction of a SAGE library from sequence files, sequence error correction, library comparison. Sequencing error correction is implementing using an Expectation Maximization Algorithm based on a Mixture Model of tag counts.
Author: Tim Beissbarth <tim.beissbarth at bioinf.med.uni-goettingen.de>, with contributions from Gordon Smyth <smyth at wehi.edu.au>
Maintainer: Tim Beissbarth <tim.beissbarth at bioinf.med.uni-goettingen.de>
citation("sagenhaft")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sagenhaft")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sagenhaft")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.