rsemmed

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see rsemmed.

An interface to the Semantic MEDLINE database

Bioconductor version: 3.21

A programmatic interface to the Semantic MEDLINE database. It provides functions for searching the database for concepts and finding paths between concepts. Path searching can also be tailored to user specifications, such as placing restrictions on concept types and the type of link between concepts. It also provides functions for summarizing and visualizing those paths.

Author: Leslie Myint [aut, cre] ORCID iD ORCID: 0000-0003-2478-0331

Maintainer: Leslie Myint <leslie.myint at gmail.com>

Citation (from within R, enter citation("rsemmed")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("rsemmed")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rsemmed")

rsemmed User's Guide HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, Pathways, Software, SystemsBiology

Version 1.18.0

In Bioconductor since BioC 3.12 (R-4.0) (5 years)

License Artistic-2.0

Depends R (>= 4.0), igraph

Imports methods, magrittr, stringr, dplyr

System Requirements

URL https://github.com/lmyint/rsemmed

Bug Reports https://github.com/lmyint/rsemmed/issues

Suggests testthat, knitr, BiocStyle, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rsemmed_1.18.0.tar.gz

Windows Binary (x86_64) rsemmed_1.18.0.zip

macOS Binary (x86_64) rsemmed_1.18.0.tgz

macOS Binary (arm64) rsemmed_1.18.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/rsemmed

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rsemmed

Bioc Package Browser https://code.bioconductor.org/browse/rsemmed/

Package Short Url https://bioconductor.org/packages/rsemmed/

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