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rrvgo

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see rrvgo.

Reduce + Visualize GO


Bioconductor version: 3.21

Reduce and visualize lists of Gene Ontology terms by identifying redudance based on semantic similarity.

Author: Sergi Sayols [aut, cre], Sara Elmeligy [ctb]

Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>

Citation (from within R, enter citation("rrvgo")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("rrvgo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rrvgo")
Using rrvgo HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

Version 1.20.0
In Bioconductor since BioC 3.11 (R-4.0) (5.5 years)
License GPL-3
Depends
Imports GOSemSim, AnnotationDbi, GO.db, pheatmap, ggplot2, ggrepel, treemap, tm, wordcloud, shiny, grDevices, grid, stats, methods, umap
System Requirements
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Linking To
Enhances
Depends On Me
Imports Me
Suggests Me genekitr, scDiffCom
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rrvgo_1.20.0.tar.gz
Windows Binary (x86_64) rrvgo_1.20.0.zip
macOS Binary (x86_64) rrvgo_1.20.0.tgz
macOS Binary (arm64) rrvgo_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rrvgo
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rrvgo
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