rrvgo
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see rrvgo.
Reduce + Visualize GO
Bioconductor version: 3.21
Reduce and visualize lists of Gene Ontology terms by identifying redudance based on semantic similarity.
Author: Sergi Sayols [aut, cre], Sara Elmeligy [ctb]
Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>
Citation (from within R, enter
citation("rrvgo")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rrvgo")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rrvgo")
Reference Manual
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NEWS
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LICENSE
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Details
Version
1.20.0
In Bioconductor since
BioC 3.11 (R-4.0) (5.5 years)
License
GPL-3
Depends
Imports
GOSemSim, AnnotationDbi, GO.db, pheatmap, ggplot2, ggrepel, treemap, tm, wordcloud, shiny, grDevices, grid, stats, methods, umap
System Requirements
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Suggests
knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), shinydashboard, DT, plotly, heatmaply, magrittr, utils, clusterProfiler, DOSE, slam, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db
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Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
rrvgo_1.20.0.tar.gz
Windows Binary (x86_64)
rrvgo_1.20.0.zip
macOS Binary (x86_64)
rrvgo_1.20.0.tgz
macOS Binary (arm64)
rrvgo_1.20.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/rrvgo
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/rrvgo
Bioc Package Browser
https://code.bioconductor.org/browse/rrvgo/
Package Short Url
https://bioconductor.org/packages/rrvgo/
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