rqt
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see rqt.
rqt: utilities for gene-level meta-analysis
DOI: 10.18129/B9.bioc.rqt
Bioconductor version: 3.21
Despite the recent advances of modern GWAS methods, it still remains an important problem of addressing calculation an effect size and corresponding p-value for the whole gene rather than for single variant. The R- package rqt offers gene-level GWAS meta-analysis. For more information, see: "Gene-set association tests for next-generation sequencing data" by Lee et al (2016), Bioinformatics, 32(17), i611-i619,
Author: Ilya Zhbannikov [aut, cre], Konstantin Arbeev [aut], Anatoliy Yashin [aut]
Maintainer: Ilya Zhbannikov <ilya.zhbannikov at duke.edu>
citation("rqt")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rqt")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rqt")
Details
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Follow Installation instructions to use this package in your R session.