ptairMS

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see ptairMS.

Pre-processing PTR-TOF-MS Data

Bioconductor version: 3.21

This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the 'sample by features' table of peak intensities in addition to the sample and feature metadata (as a singl

Author: camille Roquencourt [aut, cre]

Maintainer: camille Roquencourt <camille.roquencourt at hotmail.fr>

Citation (from within R, enter citation("ptairMS")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ptairMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ptairMS")

ptaiMS: Processing and analysis of PTR-TOF-MS data HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Alignment, MassSpectrometry, Metabolomics, PeakDetection, Preprocessing, Software

Version 1.16.0

In Bioconductor since BioC 3.13 (R-4.1) (4.5 years)

License GPL-3

Depends

Imports Biobase, bit64, chron, data.table, doParallel, DT, enviPat, foreach, ggplot2, graphics, grDevices, ggpubr, gridExtra, Hmisc, methods, minpack.lm, MSnbase, parallel, plotly, rhdf5, rlang, Rcpp, shiny, shinyscreenshot, signal, scales, stats, utils

System Requirements

URL

Bug Reports https://github.com/camilleroquencourt/ptairMS/issues

Suggests knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), ptairData, ropls

Linking To Rcpp

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ptairMS_1.16.0.tar.gz

Windows Binary (x86_64) ptairMS_1.16.0.zip

macOS Binary (x86_64) ptairMS_1.16.0.tgz

macOS Binary (arm64) ptairMS_1.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ptairMS

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ptairMS

Bioc Package Browser https://code.bioconductor.org/browse/ptairMS/

Package Short Url https://bioconductor.org/packages/ptairMS/

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