powerTCR

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see powerTCR.

Model-Based Comparative Analysis of the TCR Repertoire

Bioconductor version: 3.21

This package provides a model for the clone size distribution of the TCR repertoire. Further, it permits comparative analysis of TCR repertoire libraries based on theoretical model fits.

Author: Hillary Koch

Maintainer: Hillary Koch <hillary.koch01 at gmail.com>

Citation (from within R, enter citation("powerTCR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("powerTCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("powerTCR")

Vignette Title HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiomedicalInformatics, Clustering, Software

Version 1.28.0

In Bioconductor since BioC 3.7 (R-3.5) (7.5 years)

License Artistic-2.0

Depends

Imports cubature, doParallel, evmix, foreach, magrittr, methods, parallel, purrr, stats, truncdist, vegan, VGAM

System Requirements

URL

Suggests BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package powerTCR_1.28.0.tar.gz

Windows Binary (x86_64) powerTCR_1.28.0.zip

macOS Binary (x86_64) powerTCR_1.28.0.tgz

macOS Binary (arm64) powerTCR_1.28.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/powerTCR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/powerTCR

Bioc Package Browser https://code.bioconductor.org/browse/powerTCR/

Package Short Url https://bioconductor.org/packages/powerTCR/

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