netprioR

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see netprioR.

A model for network-based prioritisation of genes

Bioconductor version: 3.21

A model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.

Author: Fabian Schmich

Maintainer: Fabian Schmich <fabian.schmich at bsse.ethz.ch>

Citation (from within R, enter citation("netprioR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("netprioR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netprioR")

netprioR Vignette HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBasedAssays, ImmunoOncology, Network, Preprocessing, Software

Version 1.34.0

In Bioconductor since BioC 3.4 (R-3.3) (9 years)

License GPL-3

Depends methods, graphics, R (>= 3.3)

Imports stats, Matrix, dplyr, doParallel, foreach, parallel, sparseMVN, ggplot2, gridExtra, pROC

System Requirements

URL http://bioconductor.org/packages/netprioR

Suggests knitr, BiocStyle, pander

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package netprioR_1.34.0.tar.gz

Windows Binary (x86_64) netprioR_1.34.0.zip

macOS Binary (x86_64) netprioR_1.34.0.tgz

macOS Binary (arm64) netprioR_1.34.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/netprioR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netprioR

Bioc Package Browser https://code.bioconductor.org/browse/netprioR/

Package Short Url https://bioconductor.org/packages/netprioR/

Package Downloads Report Download Stats