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mobileRNA
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see mobileRNA.
mobileRNA: Investigate the RNA mobilome & population-scale changes
Bioconductor version: 3.21
Genomic analysis can be utilised to identify differences between RNA populations in two conditions, both in production and abundance. This includes the identification of RNAs produced by multiple genomes within a biological system. For example, RNA produced by pathogens within a host or mobile RNAs in plant graft systems. The mobileRNA package provides methods to pre-process, analyse and visualise the sRNA and mRNA populations based on the premise of mapping reads to all genotypes at the same time.
Author: Katie Jeynes-Cupper [aut, cre] ORCID iD ORCID: 0009-0000-1350-1371 , Marco Catoni [aut] ORCID iD ORCID: 0000-0002-3258-2522
Maintainer: Katie Jeynes-Cupper <kej031 at student.bham.ac.uk>
citation("mobileRNA")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mobileRNA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mobileRNA")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.