matter

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see matter.

Out-of-core statistical computing and signal processing

Bioconductor version: 3.21

Toolbox for larger-than-memory scientific computing and visualization, providing efficient out-of-core data structures using files or shared memory, for dense and sparse vectors, matrices, and arrays, with applications to nonuniformly sampled signals and images.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("matter")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("matter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matter")

1. Matter 2: User guide for flexible out-of-memory data structures HTML R Script

2. Matter 2: Signal and image processing HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, DataRepresentation, DimensionReduction, Infrastructure, Preprocessing, Software

Version 2.10.0

In Bioconductor since BioC 3.4 (R-3.3) (9 years)

License Artistic-2.0 | file LICENSE

Depends R (>= 4.4), BiocParallel, Matrix, methods

Imports BiocGenerics, ProtGenerics, digest, irlba, stats, stats4, graphics, grDevices, parallel, utils

System Requirements

URL https://github.com/kuwisdelu/matter

Bug Reports https://github.com/kuwisdelu/matter/issues

Suggests BiocStyle, knitr, testthat, plotly

Linking To BH

Enhances

Depends On Me CardinalIO

Imports Me Cardinal

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package matter_2.10.0.tar.gz

Windows Binary (x86_64) matter_2.10.0.zip

macOS Binary (x86_64) matter_2.10.0.tgz

macOS Binary (arm64) matter_2.10.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/matter

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/matter

Bioc Package Browser https://code.bioconductor.org/browse/matter/

Package Short Url https://bioconductor.org/packages/matter/

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