levi

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see levi.

Landscape Expression Visualization Interface

Bioconductor version: 3.21

The tool integrates data from biological networks with transcriptomes, displaying a heatmap with surface curves to evidence the altered regions.

Author: Rafael Pilan [aut], Isabelle Silva [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]

Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz at unesp.br>

Citation (from within R, enter citation("levi")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("levi")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("levi")

Using levi HTML R Script

Reference Manual PDF

NEWS Text

Version 1.26.0

In Bioconductor since BioC 3.8 (R-3.5) (7 years)

License GPL (>= 2)

Depends

Imports DT (>= 0.4), RColorBrewer (>= 1.1-2), colorspace (>= 1.3-2), dplyr (>= 0.7.4), ggplot2 (>= 2.2.1), httr (>= 1.3.1), igraph (>= 1.2.1), reshape2 (>= 1.4.3), shiny (>= 1.0.5), shinydashboard (>= 0.7.0), shinyjs (>= 1.0), xml2 (>= 1.2.0), knitr, Rcpp (>= 0.12.18), grid, grDevices, stats, utils, testthat, methods, rmarkdown

System Requirements

URL

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Follow Installation instructions to use this package in your R session.

Source Package levi_1.26.0.tar.gz

Windows Binary (x86_64) levi_1.26.0.zip

macOS Binary (x86_64) levi_1.26.0.tgz

macOS Binary (arm64) levi_1.26.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/levi

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/levi

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