koinar

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see koinar.

KoinaR - Remote machine learning inference using Koina

Bioconductor version: 3.21

A client to simplify fetching predictions from the Koina web service. Koina is a model repository enabling the remote execution of models. Predictions are generated as a response to HTTP/S requests, the standard protocol used for nearly all web traffic.

Author: Ludwig Lautenbacher [aut, cre] ORCID iD ORCID: 0000-0002-1540-5911 , Christian Panse [aut] ORCID iD ORCID: 0000-0003-1975-3064

Maintainer: Ludwig Lautenbacher <ludwig.lautenbacher at tum.de>

Citation (from within R, enter citation("koinar")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("koinar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("koinar")

On using the R lang client for koina HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, MassSpectrometry, Proteomics, Software

Version 1.2.0

In Bioconductor since BioC 3.20 (R-4.4) (1 year)

License Apache License 2.0

Depends R (>= 4.3)

Imports httr, jsonlite, methods, utils

System Requirements

URL https://github.com/wilhelm-lab/koina

Bug Reports https://github.com/wilhelm-lab/koina/issues

Suggests BiocManager, BiocStyle(>= 2.26), httptest, knitr, lattice, msdata, OrgMassSpecR, protViz, S4Vectors, Spectra, testthat, mzR

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package koinar_1.2.0.tar.gz

Windows Binary (x86_64) koinar_1.2.0.zip

macOS Binary (x86_64) koinar_1.2.0.tgz

macOS Binary (arm64) koinar_1.2.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/koinar

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/koinar

Bioc Package Browser https://code.bioconductor.org/browse/koinar/

Package Short Url https://bioconductor.org/packages/koinar/

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