iGC

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see iGC.

An integrated analysis package of Gene expression and Copy number alteration

Bioconductor version: 3.21

This package is intended to identify differentially expressed genes driven by Copy Number Alterations from samples with both gene expression and CNA data.

Author: Yi-Pin Lai [aut], Liang-Bo Wang [aut, cre], Tzu-Pin Lu [aut], Eric Y. Chuang [aut]

Maintainer: Liang-Bo Wang <r02945054 at ntu.edu.tw>

Citation (from within R, enter citation("iGC")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("iGC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iGC")

Introduction to iGC HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AssayDomain, Biological Question, CopyNumberVariation, DifferentialExpression, GeneExpression, Genetics, GenomicVariation, Microarray, MultipleComparison, ResearchField, Sequencing, Software, Technology, WorkflowStep

Version 1.38.0

In Bioconductor since BioC 3.2 (R-3.2) (10 years)

License GPL-2

Depends R (>= 3.2.0)

Imports plyr, data.table

System Requirements

URL http://github.com/ccwang002/iGC

Bug Reports http://github.com/ccwang002/iGC/issues

Suggests BiocStyle, knitr, rmarkdown

Linking To

Enhances doMC

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iGC_1.38.0.tar.gz

Windows Binary (x86_64) iGC_1.38.0.zip

macOS Binary (x86_64) iGC_1.38.0.tgz

macOS Binary (arm64) iGC_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/iGC

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iGC

Bioc Package Browser https://code.bioconductor.org/browse/iGC/

Package Short Url https://bioconductor.org/packages/iGC/

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