globalSeq

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see globalSeq.

Global Test for Counts

Bioconductor version: 3.21

The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size. Useful for testing for association between RNA-Seq and high-dimensional data.

Author: Armin Rauschenberger [aut, cre]

Maintainer: Armin Rauschenberger <armin.rauschenberger at uni.lu>

Citation (from within R, enter citation("globalSeq")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("globalSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("globalSeq")

article frame HTML

vignette frame HTML

vignette source PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, DimensionReduction, ExomeSeq, ExonArray, GeneExpression, GenomeWideAssociation, MultipleComparison, RNASeq, Regression, Sequencing, Software, Transcriptomics, WholeGenome, miRNA

Version 1.36.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License GPL-3

Depends R (>= 3.0.0)

Imports

System Requirements

URL https://github.com/rauschenberger/globalSeq

Bug Reports https://github.com/rauschenberger/globalSeq/issues

Suggests knitr, testthat, SummarizedExperiment, S4Vectors

Linking To

Enhances

Depends On Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package globalSeq_1.36.0.tar.gz

Windows Binary (x86_64) globalSeq_1.36.0.zip (64-bit only)

macOS Binary (x86_64) globalSeq_1.36.0.tgz

macOS Binary (arm64) globalSeq_1.36.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/globalSeq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/globalSeq

Bioc Package Browser https://code.bioconductor.org/browse/globalSeq/

Package Short Url https://bioconductor.org/packages/globalSeq/

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