genomeIntervals

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see genomeIntervals.

Operations on genomic intervals

Bioconductor version: 3.21

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

Author: Julien Gagneur <gagneur at in.tum.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme

Maintainer: Julien Gagneur <gagneur at in.tum.de>

Citation (from within R, enter citation("genomeIntervals")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("genomeIntervals")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genomeIntervals")

Overview of the genomeIntervals package. PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Genetics, Infrastructure, Software

Version 1.64.0

In Bioconductor since BioC 2.4 (R-2.9) (16.5 years)

License Artistic-2.0

Depends R (>= 2.15.0), methods, intervals (>= 0.14.0), BiocGenerics(>= 0.15.2)

Imports GenomeInfoDb(>= 1.5.8), GenomicRanges(>= 1.21.16), IRanges(>= 2.3.14), S4Vectors(>= 0.7.10)

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me girafe

Imports Me easyRNASeq

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package genomeIntervals_1.64.0.tar.gz

Windows Binary (x86_64) genomeIntervals_1.64.0.zip

macOS Binary (x86_64) genomeIntervals_1.64.0.tgz

macOS Binary (arm64) genomeIntervals_1.64.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/genomeIntervals

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/genomeIntervals

Bioc Package Browser https://code.bioconductor.org/browse/genomeIntervals/

Package Short Url https://bioconductor.org/packages/genomeIntervals/

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