geneplotter

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see geneplotter.

Graphics related functions for Bioconductor

Bioconductor version: 3.21

Functions for plotting genomic data

Author: Robert Gentleman [aut], Rohit Satyam [ctb] (Converted geneplotter vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("geneplotter")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("geneplotter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneplotter")

How to Assemble a chromLocation Object HTML R Script

Visualization of Microarray Data PDF R Script

Reference Manual PDF

README Text

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Software, Visualization

Version 1.86.0

In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20.5 years)

License Artistic-2.0

Depends R (>= 2.10), methods, Biobase, BiocGenerics, lattice, annotate

Imports AnnotationDbi, graphics, grDevices, grid, RColorBrewer, stats, utils

System Requirements

URL

Suggests Rgraphviz, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db, BiocStyle, knitr

Linking To

Enhances

Depends On Me HD2013SGI, Hiiragi2013, maEndToEnd

Imports Me biocGraph, DEXSeq, MethylSeekR

Suggests Me biocGraph, Category, EnrichmentBrowser, GOstats, Single.mTEC.Transcriptomes

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package geneplotter_1.86.0.tar.gz

Windows Binary (x86_64) geneplotter_1.86.0.zip

macOS Binary (x86_64) geneplotter_1.86.0.tgz

macOS Binary (arm64) geneplotter_1.86.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/geneplotter

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/geneplotter

Bioc Package Browser https://code.bioconductor.org/browse/geneplotter/

Package Short Url https://bioconductor.org/packages/geneplotter/

Package Downloads Report Download Stats