flowPloidy

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see flowPloidy.

Analyze flow cytometer data to determine sample ploidy

Bioconductor version: 3.21

Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

Author: Tyler Smith <tyler at plantarum.ca>

Maintainer: Tyler Smith <tyler at plantarum.ca>

Citation (from within R, enter citation("flowPloidy")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("flowPloidy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowPloidy")

flowPloidy: FCM Histograms PDF R Script

flowPloidy: Getting Started PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews FlowCytometry, GUI, Regression, Software, Visualization

Version 1.34.0

In Bioconductor since BioC 3.4 (R-3.3) (9 years)

License GPL-3

Depends

Imports flowCore, car, caTools, knitr, rmarkdown, minpack.lm, shiny, methods, graphics, stats, utils

System Requirements

URL https://github.com/plantarum/flowPloidy

Bug Reports https://github.com/plantarum/flowPloidy/issues

Suggests flowPloidyData, testthat

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowPloidy_1.34.0.tar.gz

Windows Binary (x86_64) flowPloidy_1.34.0.zip (64-bit only)

macOS Binary (x86_64) flowPloidy_1.34.0.tgz

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/flowPloidy

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowPloidy

Bioc Package Browser https://code.bioconductor.org/browse/flowPloidy/

Package Short Url https://bioconductor.org/packages/flowPloidy/

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