flowAI

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see flowAI.

Automatic and interactive quality control for flow cytometry data

Bioconductor version: 3.21

The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.

Author: Gianni Monaco [aut], Chen Hao [ctb]

Maintainer: Gianni Monaco <mongianni1 at gmail.com>

Citation (from within R, enter citation("flowAI")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("flowAI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowAI")

Automatic and GUI methods to do quality control on Flow cytometry Data HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiomedicalInformatics, FlowCytometry, ImmunoOncology, QualityControl, Software

Version 1.38.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License GPL (>= 2)

Depends R (>= 4.3.0)

Imports ggplot2, flowCore, plyr, changepoint, knitr, reshape2, RColorBrewer, scales, methods, graphics, stats, utils, rmarkdown

System Requirements

URL

Suggests testthat, shiny, BiocStyle

Linking To

Enhances

Depends On Me

Imports Me CytoPipeline

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowAI_1.38.0.tar.gz

Windows Binary (x86_64) flowAI_1.38.0.zip (64-bit only)

macOS Binary (x86_64) flowAI_1.38.0.tgz

macOS Binary (arm64) flowAI_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/flowAI

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowAI

Bioc Package Browser https://code.bioconductor.org/browse/flowAI/

Package Short Url https://bioconductor.org/packages/flowAI/

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