epivizrStandalone

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see epivizrStandalone.

Run Epiviz Interactive Genomic Data Visualization App within R

Bioconductor version: 3.21

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Author: Hector Corrada Bravo, Jayaram Kancherla

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrStandalone")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("epivizrStandalone")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrStandalone")

Introduction to epivizrStandalone HTML

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GUI, Infrastructure, Software, Visualization

Version 1.36.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License MIT + file LICENSE

Depends R (>= 3.2.3), epivizr(>= 2.3.6), methods

Imports git2r, epivizrServer, GenomeInfoDb, BiocGenerics, GenomicFeatures, S4Vectors

System Requirements

URL

Suggests testthat, knitr, rmarkdown, OrganismDbi(>= 1.13.9), Mus.musculus, Biobase, BiocStyle

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me scTreeViz

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epivizrStandalone_1.36.0.tar.gz

Windows Binary (x86_64) epivizrStandalone_1.36.0.zip

macOS Binary (x86_64) epivizrStandalone_1.36.0.tgz

macOS Binary (arm64) epivizrStandalone_1.36.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/epivizrStandalone

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epivizrStandalone

Bioc Package Browser https://code.bioconductor.org/browse/epivizrStandalone/

Package Short Url https://bioconductor.org/packages/epivizrStandalone/

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