cycle

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see cycle.

Significance of periodic expression pattern in time-series data

Bioconductor version: 3.21

Package for assessing the statistical significance of periodic expression based on Fourier analysis and comparison with data generated by different background models

Author: Matthias Futschik <mfutschik at ualg.pt>

Maintainer: Matthias Futschik <mfutschik at ualg.pt>

Citation (from within R, enter citation("cycle")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("cycle")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cycle")

Introduction to cycle PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Microarray, Software, TimeCourse

Version 1.62.0

In Bioconductor since BioC 2.5 (R-2.10) (16 years)

License GPL-2

Depends R (>= 2.10.0), Mfuzz

Imports Biobase, stats

System Requirements

URL http://cycle.sysbiolab.eu

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cycle_1.62.0.tar.gz

Windows Binary (x86_64) cycle_1.62.0.zip

macOS Binary (x86_64) cycle_1.62.0.tgz

macOS Binary (arm64) cycle_1.62.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/cycle

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cycle

Bioc Package Browser https://code.bioconductor.org/browse/cycle/

Package Short Url https://bioconductor.org/packages/cycle/

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