customCMPdb

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see customCMPdb.

Customize and Query Compound Annotation Database

Bioconductor version: 3.21

This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.

Author: Yuzhu Duan [aut, cre], Thomas Girke [aut]

Maintainer: Yuzhu Duan <yduan004 at ucr.edu>

Citation (from within R, enter citation("customCMPdb")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("customCMPdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("customCMPdb")

customCMPdb HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationHubSoftware, Cheminformatics, Software

Version 1.18.0

In Bioconductor since BioC 3.12 (R-4.0) (5 years)

License Artistic-2.0

Depends R (>= 4.0)

Imports AnnotationHub, RSQLite, XML, utils, ChemmineR, methods, stats, rappdirs, BiocFileCache

System Requirements

URL https://github.com/yduan004/customCMPdb/

Bug Reports https://github.com/yduan004/customCMPdb/issues

Suggests knitr, rmarkdown, testthat, BiocStyle

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package customCMPdb_1.18.0.tar.gz

Windows Binary (x86_64) customCMPdb_1.18.0.zip

macOS Binary (x86_64) customCMPdb_1.18.0.tgz

macOS Binary (arm64) customCMPdb_1.18.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/customCMPdb

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/customCMPdb

Bioc Package Browser https://code.bioconductor.org/browse/customCMPdb/

Package Short Url https://bioconductor.org/packages/customCMPdb/

Package Downloads Report Download Stats