clstutils

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see clstutils.

Tools for performing taxonomic assignment

Bioconductor version: 3.21

Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.

Author: Noah Hoffman

Maintainer: Noah Hoffman <ngh2 at uw.edu>

Citation (from within R, enter citation("clstutils")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("clstutils")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clstutils")

clst PDF R Script

clstutils PDF R Script

Reference Manual PDF

Version 1.56.0

In Bioconductor since BioC 2.8 (R-2.13) (14.5 years)

License GPL-3

Depends R (>= 2.10), clst, rjson, ape

Imports lattice, RSQLite

System Requirements

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Suggests RUnit

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Depends On Me

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Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64) clstutils_1.56.0.zip

macOS Binary (x86_64) clstutils_1.56.0.tgz

macOS Binary (arm64) clstutils_1.56.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/clstutils

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clstutils

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