cellmigRation

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see cellmigRation.

Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Bioconductor version: 3.21

Import TIFF images of fluorescently labeled cells, and track cell movements over time. Parallelization is supported for image processing and for fast computation of cell trajectories. In-depth analysis of cell trajectories is enabled by 15 trajectory analysis functions.

Author: Salim Ghannoum [aut, cph], Damiano Fantini [aut, cph], Waldir Leoncio [cre, aut], Øystein Sørensen [aut]

Maintainer: Waldir Leoncio <w.l.netto at medisin.uio.no>

Citation (from within R, enter citation("cellmigRation")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("cellmigRation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellmigRation")

cellmigRation HTML R Script

Reference Manual PDF

README Text

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBiology, DataImport, DataRepresentation, Software

Version 1.16.0

In Bioconductor since BioC 3.13 (R-4.1) (4.5 years)

License GPL-2

Depends R (>= 4.1), methods, foreach

Imports tiff, graphics, stats, utils, reshape2, parallel, doParallel, grDevices, matrixStats, FME, SpatialTools, sp, vioplot, FactoMineR, Hmisc

System Requirements

URL https://github.com/ocbe-uio/cellmigRation/

Bug Reports https://github.com/ocbe-uio/cellmigRation/issues

Suggests knitr, rmarkdown, dplyr, ggplot2, RUnit, BiocGenerics, BiocManager, kableExtra, rgl

Linking To

Enhances

Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cellmigRation_1.16.0.tar.gz

Windows Binary (x86_64) cellmigRation_1.16.0.zip

macOS Binary (x86_64) cellmigRation_1.16.0.tgz

macOS Binary (arm64) cellmigRation_1.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/cellmigRation

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cellmigRation

Bioc Package Browser https://code.bioconductor.org/browse/cellmigRation/

Package Short Url https://bioconductor.org/packages/cellmigRation/

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