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celaref
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see celaref.
Single-cell RNAseq cell cluster labelling by reference
Bioconductor version: 3.21
After the clustering step of a single-cell RNAseq experiment, this package aims to suggest labels/cell types for the clusters, on the basis of similarity to a reference dataset. It requires a table of read counts per cell per gene, and a list of the cells belonging to each of the clusters, (for both test and reference data).
Author: Sarah Williams [aut, cre]
Maintainer: Sarah Williams <sarah.williams1 at monash.edu>
citation("celaref")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("celaref")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("celaref")
Details
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Follow Installation instructions to use this package in your R session.