beachmat.tiledb

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see beachmat.tiledb.

beachmat bindings for TileDB-backed matrices

Bioconductor version: 3.21

Extends beachmat to initialize tatami matrices from TileDB-backed arrays. This allows C++ code in downstream packages to directly call the TileDB C/C++ library to access array data, without the need for block processing via DelayedArray. Developers only need to import this package to automatically extend the capabilities of beachmat::initializeCpp to TileDBArray instances.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("beachmat.tiledb")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("beachmat.tiledb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beachmat.tiledb")

User guide HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, DataRepresentation, Infrastructure, Software

Version 1.0.0

In Bioconductor since BioC 3.21 (R-4.5) (0.5 years)

License GPL-3

Depends

Imports methods, beachmat, tiledb, TileDBArray, DelayedArray, Rcpp

System Requirements C++17

URL https://github.com/tatami-inc/beachmat.tiledb

Bug Reports https://github.com/tatami-inc/beachmat.tiledb/issues

Suggests testthat, BiocStyle, knitr, rmarkdown, Matrix

Linking To Rcpp, assorthead, beachmat

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package beachmat.tiledb_1.0.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64) beachmat.tiledb_1.0.0.tgz

macOS Binary (arm64) beachmat.tiledb_1.0.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/beachmat.tiledb

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/beachmat.tiledb

Bioc Package Browser https://code.bioconductor.org/browse/beachmat.tiledb/

Package Short Url https://bioconductor.org/packages/beachmat.tiledb/

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