XDE

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see XDE.

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Bioconductor version: 3.21

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("XDE")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("XDE")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XDE")

XDE Vignette PDF R Script

XdeParameterClass Vignette PDF R Script

Reference Manual PDF

NEWS Text

Version 2.54.0

In Bioconductor since BioC 2.2 (R-2.7) (17.5 years)

License LGPL-2

Depends R (>= 2.10.0), Biobase(>= 2.5.5)

Imports BiocGenerics, genefilter, graphics, grDevices, gtools, methods, stats, utils, mvtnorm, RColorBrewer, GeneMeta, siggenes

System Requirements

URL

Suggests MASS, RUnit

Linking To

Enhances coda

Depends On Me

Imports Me

Suggests Me

Links To Me

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Follow Installation instructions to use this package in your R session.

Source Package XDE_2.54.0.tar.gz

Windows Binary (x86_64) XDE_2.54.0.zip

macOS Binary (x86_64) XDE_2.54.0.tgz

macOS Binary (arm64) XDE_2.54.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/XDE

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/XDE

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