TTMap
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see TTMap.
Two-Tier Mapper: a clustering tool based on topological data analysis
Bioconductor version: 3.21
TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.
Author: Rachel Jeitziner
Maintainer: Rachel Jeitziner <rachel.jeitziner at epfl.ch>
Citation (from within R, enter
citation("TTMap")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TTMap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TTMap") Reference Manual
PDF
Details
biocViews
Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software
Version
1.30.0
In Bioconductor since
BioC 3.7 (R-3.5) (7.5 years)
License
GPL-2
Depends
rgl, colorRamps
Imports
grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase
System Requirements
See More
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
TTMap_1.30.0.tar.gz
Windows Binary (x86_64)
TTMap_1.30.0.zip
macOS Binary (x86_64)
TTMap_1.30.0.tgz
macOS Binary (arm64)
TTMap_1.30.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/TTMap
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/TTMap
Bioc Package Browser
https://code.bioconductor.org/browse/TTMap/
Package Short Url
https://bioconductor.org/packages/TTMap/
Package Downloads Report
Download Stats