Rqc

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see Rqc.

Quality Control Tool for High-Throughput Sequencing Data

Bioconductor version: 3.21

Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("Rqc")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("Rqc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rqc")

Using Rqc HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, QualityControl, Sequencing, Software

Version 1.42.0

In Bioconductor since BioC 3.0 (R-3.1) (11 years)

License GPL (>= 2)

Depends BiocParallel, ShortRead, ggplot2

Imports BiocGenerics(>= 0.25.1), Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles

System Requirements

URL https://github.com/labbcb/Rqc

Bug Reports https://github.com/labbcb/Rqc/issues

Suggests rmarkdown, testthat

Linking To Rcpp

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rqc_1.42.0.tar.gz

Windows Binary (x86_64) Rqc_1.42.0.zip

macOS Binary (x86_64) Rqc_1.42.0.tgz

macOS Binary (arm64) Rqc_1.42.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/Rqc

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rqc

Bioc Package Browser https://code.bioconductor.org/browse/Rqc/

Package Short Url https://bioconductor.org/packages/Rqc/

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