ReactomeContentService4R

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.21 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ReactomeContentService4R.

Interface for the Reactome Content Service

DOI: 10.18129/B9.bioc.ReactomeContentService4R

Bioconductor version: 3.21

Reactome is a free, open-source, open access, curated and peer-reviewed knowledgebase of bio-molecular pathways. This package is to interact with the Reactome Content Service API. Pre-built functions would allow users to retrieve data and images that consist of proteins, pathways, and other molecules related to a specific gene or entity in Reactome.

Author: Chi-Lam Poon [aut, cre] ORCID iD ORCID: 0000-0001-6298-7099 , Reactome [cph]

Maintainer: Chi-Lam Poon <clpoon807 at gmail.com>

Citation (from within R, enter citation("ReactomeContentService4R")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ReactomeContentService4R")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Pathways, Reactome, Software

Version 1.16.0

In Bioconductor since BioC 3.13 (R-4.1) (4.5 years)

License Apache License (>= 2.0) | file LICENSE

Depends

Imports httr, jsonlite, utils, magick (>= 2.5.1), data.table, doParallel, foreach, parallel

System Requirements

URL https://github.com/reactome/ReactomeContentService4R

Bug Reports https://github.com/reactome/ReactomeContentService4R/issues

Suggests pdftools, testthat, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/ReactomeContentService4R

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ReactomeContentService4R

Package Short Url https://bioconductor.org/packages/ReactomeContentService4R/

Package Downloads Report Download Stats