RcwlPipelines

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see RcwlPipelines.

Bioinformatics pipelines based on Rcwl

Bioconductor version: 3.21

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

Author: Qiang Hu [aut, cre], Qian Liu [aut], Shuang Gao [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("RcwlPipelines")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("RcwlPipelines")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RcwlPipelines")

RcwlPipelines HTML R Script

Reference Manual PDF

NEWS Text

Version 1.24.0

In Bioconductor since BioC 3.9 (R-3.6) (6.5 years)

License GPL-2

Depends R (>= 3.6), Rcwl, BiocFileCache

Imports rappdirs, methods, utils, git2r, httr, S4Vectors

System Requirements nodejs

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Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64)

macOS Binary (x86_64) RcwlPipelines_1.24.0.tgz

macOS Binary (arm64) RcwlPipelines_1.24.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/RcwlPipelines

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RcwlPipelines

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