Rbwa

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see Rbwa.

R wrapper for BWA-backtrack and BWA-MEM aligners

Bioconductor version: 3.21

Provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.

Author: Jean-Philippe Fortin [aut, cre]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("Rbwa")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("Rbwa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rbwa")

An introduction to Rbwa HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Alignment, Sequencing, Software

Version 1.12.0

In Bioconductor since BioC 3.15 (R-4.2) (3.5 years)

License MIT + file LICENSE

Depends R (>= 4.1)

Imports

System Requirements GNU make

URL https://github.com/Jfortin1/Rbwa

Bug Reports https://github.com/crisprVerse/Rbwa/issues

Suggests testthat, BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me crisprBwa

Suggests Me crisprDesign

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rbwa_1.12.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64) Rbwa_1.12.0.tgz

macOS Binary (arm64) Rbwa_1.12.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/Rbwa

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rbwa

Bioc Package Browser https://code.bioconductor.org/browse/Rbwa/

Package Short Url https://bioconductor.org/packages/Rbwa/

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