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Rbowtie2
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see Rbowtie2.
An R Wrapper for Bowtie2 and AdapterRemoval
Bioconductor version: 3.21
This package provides an R wrapper of the popular bowtie2 sequencing reads aligner and AdapterRemoval, a convenient tool for rapid adapter trimming, identification, and read merging. The package contains wrapper functions that allow for genome indexing and alignment to those indexes. The package also allows for the creation of .bam files via Rsamtools.
Author: Zheng Wei [aut, cre], Wei Zhang [aut]
Maintainer: Zheng Wei <wzweizheng at qq.com>
citation("Rbowtie2")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rbowtie2")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rbowtie2")
Details
Package Archives
Follow Installation instructions to use this package in your R session.