RGSEA

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see RGSEA.

Random Gene Set Enrichment Analysis

Bioconductor version: 3.21

Combining bootstrap aggregating and Gene set enrichment analysis (GSEA), RGSEA is a classfication algorithm with high robustness and no over-fitting problem. It performs well especially for the data generated from different exprements.

Author: Chengcheng Ma

Maintainer: Chengcheng Ma <ccma at sibs.ac.cn>

Citation (from within R, enter citation("RGSEA")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("RGSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RGSEA")

Introduction to RGSEA PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, GeneSetEnrichment, Software, StatisticalMethod

Version 1.42.0

In Bioconductor since BioC 3.0 (R-3.1) (11 years)

License GPL(>=3)

Depends R (>= 2.10.0)

Imports BiocGenerics

System Requirements

URL

Suggests BiocStyle, GEOquery, knitr, RUnit

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RGSEA_1.42.0.tar.gz

Windows Binary (x86_64) RGSEA_1.42.0.zip (64-bit only)

macOS Binary (x86_64) RGSEA_1.42.0.tgz

macOS Binary (arm64) RGSEA_1.42.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/RGSEA

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RGSEA

Bioc Package Browser https://code.bioconductor.org/browse/RGSEA/

Package Short Url https://bioconductor.org/packages/RGSEA/

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