RBioFormats

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see RBioFormats.

R interface to Bio-Formats

Bioconductor version: 3.21

An R package which interfaces the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.

Author: Andrzej Oleś [aut, cre] ORCID iD ORCID: 0000-0003-0285-2787 , John Lee [ctb] ORCID iD ORCID: 0000-0001-5884-4247

Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>

Citation (from within R, enter citation("RBioFormats")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("RBioFormats")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RBioFormats")

RBioFormats: an R interface to the Bio-Formats library HTML R Script

Reference Manual PDF

biocViews DataImport, Software

Version 1.8.0

In Bioconductor since BioC 3.17 (R-4.3) (2.5 years)

License GPL-3

Depends

Imports EBImage, methods, rJava (>= 0.9-6), S4Vectors, stats

System Requirements Java (>= 1.7)

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Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64) RBioFormats_1.8.0.zip

macOS Binary (x86_64) RBioFormats_1.8.0.tgz

macOS Binary (arm64) RBioFormats_1.8.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/RBioFormats

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RBioFormats

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