OTUbase

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see OTUbase.

Provides structure and functions for the analysis of OTU data

Bioconductor version: 3.21

Provides a platform for Operational Taxonomic Unit based analysis

Author: Daniel Beck, Matt Settles, and James A. Foster

Maintainer: Daniel Beck <danlbek at gmail.com>

Citation (from within R, enter citation("OTUbase")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("OTUbase")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OTUbase")

An introduction to OTUbase PDF R Script

Reference Manual PDF

Version 1.58.0

In Bioconductor since BioC 2.7 (R-2.12) (15 years)

License Artistic-2.0

Depends R (>= 2.9.0), methods, S4Vectors, IRanges, ShortRead(>= 1.23.15), Biobase, vegan

Imports Biostrings

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Follow Installation instructions to use this package in your R session.

Source Package OTUbase_1.58.0.tar.gz

Windows Binary (x86_64) OTUbase_1.58.0.zip

macOS Binary (x86_64) OTUbase_1.58.0.tgz

macOS Binary (arm64) OTUbase_1.58.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/OTUbase

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OTUbase

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