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MsBackendMetaboLights
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see MsBackendMetaboLights.
Retrieve Mass Spectrometry Data from MetaboLights
Bioconductor version: 3.21
MetaboLights is one of the main public repositories for storage of metabolomics experiments, which includes analysis results as well as raw data. The MsBackendMetaboLights package provides functionality to retrieve and represent mass spectrometry (MS) data from MetaboLights. Data files are downloaded and cached locally avoiding repetitive downloads. MS data from metabolomics experiments can thus be directly and seamlessly integrated into R-based analysis workflows with the Spectra and MsBackendMetaboLights package.
Author: Johannes Rainer [aut, cre] ORCID iD ORCID: 0000-0002-6977-7147 , Philippine Louail [aut] ORCID iD ORCID: 0009-0007-5429-6846
Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>
citation("MsBackendMetaboLights")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsBackendMetaboLights")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsBackendMetaboLights")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.